International Journal of Innovative Approaches in Science Research
Abbreviation: IJIASR | ISSN (Print): 2602-4810 | ISSN (Online): 2602-4535 | DOI: 10.29329/ijiasr

Original article    |    Open Access
International Journal of Innovative Approaches in Science Research 2023, Vol. 7(1) 1-8

Identification and Gene Expression Analysis of TIR1 in Easy and Hard to Root Olive (Olea europaea L.) Cultivars

Fatih Sezer

pp. 1 - 8   |  DOI: https://doi.org/10.29329/ijiasr.2023.524.1

Published online: March 20, 2023  |   Number of Views: 30  |  Number of Download: 267


Abstract

Many plant species can be efficiently propagated vegetatively through the use of cuttings. Although simple to implement, the success rate of this method is restricted by the plants ability to produce adventitious roots. Auxin hormones are commonly used to induce adventitious roots in propagation by cuttings. The auxin metabolism influences plant growth and is significant because it can also affect the rooting performance of the IBA hormone commonly used during steel production. Olive trees (Olea europaea L.) are among the species that are commonly propagated using cuttings. However, the rooting success of olive cultivars grown for agriculture varies. For these reasons we analyzed the gene structure and expression rates of Olive TIR1, which is the receptor of auxins. We chose Gemlik (easy to root) and Domat (Hard to root) cultivars for the gene expression analysis. Our analysis revealed that OeTIR1 is coded by Oeu047472.1 and it contains 3 exons and codes for 594 amino acid protein and a coding sequence of 1785 nucleotides. Gene expression results showed different expression patterns between cultivars. Results indicate that in Gemlik cultivar expression of OeTIR1 does not show any upregulation after IBA application. Domat however showed an increase in expression only after 7 days.

Keywords: Auxin Receptors. Plant hormone Metabolism, Gene expression


How to Cite this Article

APA 6th edition
Sezer, F. (2023). Identification and Gene Expression Analysis of TIR1 in Easy and Hard to Root Olive (Olea europaea L.) Cultivars . International Journal of Innovative Approaches in Science Research, 7(1), 1-8. doi: 10.29329/ijiasr.2023.524.1

Harvard
Sezer, F. (2023). Identification and Gene Expression Analysis of TIR1 in Easy and Hard to Root Olive (Olea europaea L.) Cultivars . International Journal of Innovative Approaches in Science Research, 7(1), pp. 1-8.

Chicago 16th edition
Sezer, Fatih (2023). "Identification and Gene Expression Analysis of TIR1 in Easy and Hard to Root Olive (Olea europaea L.) Cultivars ". International Journal of Innovative Approaches in Science Research 7 (1):1-8. doi:10.29329/ijiasr.2023.524.1.

References
  1. Arnholdt-Schmitt, B., Costa, J. H., & de Melo, D. F. (2006). AOX – a functional marker for efficient cell reprogramming under stress? Trends in Plant Science, 11(6), 281–287. https://doi.org/10.1016/j.tplants.2006.05.001 [Google Scholar] [Crossref] 
  2. Hedayati, V., Mousavi, A., Razavi, K., Cultrera, N., Alagna, F., Mariotti, R., Hosseini-Mazinani, M., & Baldoni, L. (2015). Polymorphisms in the AOX2 gene are associated with the rooting ability of olive cuttings. Plant Cell Reports, 34(7), 1151–1164. https://doi.org/10.1007/s00299-015-1774-0 [Google Scholar] [Crossref] 
  3. Hürkan, K., Sezer, F., Özbilen, A., & Taşkın, K. M. (2018). Identification of reference genes for real-time quantitative polymerase chain reaction based gene expression studies on various Olive ( Olea europaea L.) tissues. The Journal of Horticultural Science and Biotechnology, 93(6), 644–651. https://doi.org/10.1080/14620316.2018.1427005 [Google Scholar] [Crossref] 
  4. Korasick, D. A., Jez, J. M., & Strader, L. C. (2015). Refining the nuclear auxin response pathway through structural biology. Current Opinion in Plant Biology, 27, 22–28. https://doi.org/10.1016/j.pbi.2015.05.007 [Google Scholar] [Crossref] 
  5. Noceda, C., Peixe, A., & Arnholdt-Schmitt, B. (2020). Selection of Reference Genes for Transcription Studies on Adventitious Root Induction in Olive (Olea Europaea L.) Microshoots Considering Co-expression and Average Transcriptional Stability [Preprint]. In Review. https://doi.org/10.21203/rs.3.rs-60001/v1 [Google Scholar] [Crossref] 
  6. Pfaffl, M. W. (2019). Polymerase Chain Reaction: Theory and Technology. Caister Academic Press. https://doi.org/10.21775/9781912530243 [Google Scholar] [Crossref] 
  7. Salehin, M., Bagchi, R., & Estelle, M. (2015). SCF TIR1/AFB -Based Auxin Perception: Mechanism and Role in Plant Growth and Development. The Plant Cell, 27(1), 9–19. https://doi.org/10.1105/tpc.114.133744 [Google Scholar] [Crossref] 
  8. Shu, W., Zhou, H., Jiang, C., Zhao, S., Wang, L., Li, Q., Yang, Z., Groover, A., & Lu, M.-Z. (2019). The auxin receptor TIR1 homolog (PagFBL 1) regulates adventitious rooting through interactions with Aux/IAA28 in Populus. Plant Biotechnology Journal, 17(2), 338–349. https://doi.org/10.1111/pbi.12980 [Google Scholar] [Crossref] 
  9. Velada, I., Cardoso, H., Porfirio, S., & Peixe, A. (2020). Expression Profile of PIN-Formed Auxin Efflux Carrier Genes during IBA-Induced In Vitro Adventitious Rooting in Olea europaea L. Plants, 9(2), 185. https://doi.org/10.3390/plants9020185 [Google Scholar] [Crossref] 
  10. Velada, I., Grzebelus, D., Lousa, D., M. Soares, C., Santos Macedo, E., Peixe, A., Arnholdt-Schmitt, B., & G. Cardoso, H. (2018). AOX1-Subfamily Gene Members in Olea europaea cv. “Galega Vulgar”—Gene Characterization and Expression of Transcripts during IBA-Induced in Vitro Adventitious Rooting. International Journal of Molecular Sciences, 19(2), 597. https://doi.org/10.3390/ijms19020597 [Google Scholar] [Crossref] 
  11. Wang, R., & Estelle, M. (2014). Diversity and specificity: Auxin perception and signaling through the TIR1/AFB pathway. Current Opinion in Plant Biology, 21, 51–58. https://doi.org/10.1016/j.pbi.2014.06.006 [Google Scholar] [Crossref]